J5_7RQ9_018

3D structure

PDB id

7RQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7RQ9_018 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0788

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

7RQ9|1|2a|C|36
7RQ9|1|2a|U|37
7RQ9|1|2a|G|38
7RQ9|1|2a|G|39
*
7RQ9|1|2a|C|403
7RQ9|1|2a|U|404
7RQ9|1|2a|U|405
7RQ9|1|2a|G|406
*
7RQ9|1|2a|C|436
7RQ9|1|2a|U|437
7RQ9|1|2a|G|438
7RQ9|1|2a|A|439
7RQ9|1|2a|A|441
7RQ9|1|2a|C|442
*
7RQ9|1|2a|G|492
7RQ9|1|2a|G|493
7RQ9|1|2a|U|494
7RQ9|1|2a|A|495
7RQ9|1|2a|A|496
7RQ9|1|2a|U|498
7RQ9|1|2a|A|499
7RQ9|1|2a|G|500
*
7RQ9|1|2a|C|545
7RQ9|1|2a|G|546
7RQ9|1|2a|A|547
7RQ9|1|2a|G|548

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12