J5_7RQA_005

3D structure

PDB id

7RQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GCAAGUUGG*UG*CC*GUGAACAGG*CGC

Length

25 nucleotides

Bulged bases

7RQA|1|1A|G|1758, 7RQA|1|1A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7RQA_005 not in the Motif Atlas

Homologous match to J5_9DFE_005

Geometric discrepancy: 0.0516

The information below is about J5_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.2

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

11

Unit IDs

7RQA|1|1A|G|1674
7RQA|1|1A|C|1675
7RQA|1|1A|A|1676
7RQA|1|1A|A|1677
7RQA|1|1A|G|1678
7RQA|1|1A|U|1679
7RQA|1|1A|U|1680
7RQA|1|1A|G|1681
7RQA|1|1A|G|1682
*
7RQA|1|1A|U|1706
7RQA|1|1A|G|1707
*
7RQA|1|1A|C|1751
7RQA|1|1A|C|1752
*
7RQA|1|1A|G|1756
7RQA|1|1A|U|1757
7RQA|1|1A|G|1758
7RQA|1|1A|A|1759
7RQA|1|1A|A|1760
7RQA|1|1A|C|1761
7RQA|1|1A|A|1762
7RQA|1|1A|G|1763
7RQA|1|1A|G|1764
*
7RQA|1|1A|C|1988
7RQA|1|1A|G|1989
7RQA|1|1A|C|1990

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1O

50S ribosomal protein L14

Chain 1T

50S ribosomal protein L19

Chain 1a

Small subunit ribosomal RNA; SSU rRNA