J5_7RQA_018

3D structure

PDB id

7RQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7RQA_018 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0866

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

7RQA|1|2a|C|36
7RQA|1|2a|U|37
7RQA|1|2a|G|38
7RQA|1|2a|G|39
*
7RQA|1|2a|C|403
7RQA|1|2a|U|404
7RQA|1|2a|U|405
7RQA|1|2a|G|406
*
7RQA|1|2a|C|436
7RQA|1|2a|U|437
7RQA|1|2a|G|438
7RQA|1|2a|A|439
7RQA|1|2a|A|441
7RQA|1|2a|C|442
*
7RQA|1|2a|G|492
7RQA|1|2a|G|493
7RQA|1|2a|U|494
7RQA|1|2a|A|495
7RQA|1|2a|A|496
7RQA|1|2a|U|498
7RQA|1|2a|A|499
7RQA|1|2a|G|500
*
7RQA|1|2a|C|545
7RQA|1|2a|G|546
7RQA|1|2a|A|547
7RQA|1|2a|G|548

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12