J5_7RQD_001

3D structure

PDB id

7RQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

7RQD|1|1A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7RQD_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0546

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7RQD|1|1A|C|47
7RQD|1|1A|G|48
7RQD|1|1A|A|49
7RQD|1|1A|U|50
7RQD|1|1A|G|51
7RQD|1|1A|A|52
7RQD|1|1A|A|53
7RQD|1|1A|G|54
*
7RQD|1|1A|C|116
7RQD|1|1A|G|117
7RQD|1|1A|A|118
7RQD|1|1A|A|119
7RQD|1|1A|U|120
7RQD|1|1A|G|121
*
7RQD|1|1A|C|130
7RQD|1|1A|G|131
*
7RQD|1|1A|C|148
7RQD|1|1A|A|149
7RQD|1|1A|C|150
*
7RQD|1|1A|G|176
7RQD|1|1A|G|177
7RQD|1|1A|G|178

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23