J5_7RQD_018

3D structure

PDB id

7RQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7RQD_018 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.093

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

7RQD|1|2a|C|36
7RQD|1|2a|U|37
7RQD|1|2a|G|38
7RQD|1|2a|G|39
*
7RQD|1|2a|C|403
7RQD|1|2a|U|404
7RQD|1|2a|U|405
7RQD|1|2a|G|406
*
7RQD|1|2a|C|436
7RQD|1|2a|U|437
7RQD|1|2a|G|438
7RQD|1|2a|A|439
7RQD|1|2a|A|441
7RQD|1|2a|C|442
*
7RQD|1|2a|G|492
7RQD|1|2a|G|493
7RQD|1|2a|U|494
7RQD|1|2a|A|495
7RQD|1|2a|A|496
7RQD|1|2a|U|498
7RQD|1|2a|A|499
7RQD|1|2a|G|500
*
7RQD|1|2a|C|545
7RQD|1|2a|G|546
7RQD|1|2a|A|547
7RQD|1|2a|G|548

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12