J5_7RQE_018

3D structure

PDB id

7RQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7RQE_018 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0842

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

7RQE|1|2a|C|36
7RQE|1|2a|U|37
7RQE|1|2a|G|38
7RQE|1|2a|G|39
*
7RQE|1|2a|C|403
7RQE|1|2a|U|404
7RQE|1|2a|U|405
7RQE|1|2a|G|406
*
7RQE|1|2a|C|436
7RQE|1|2a|U|437
7RQE|1|2a|G|438
7RQE|1|2a|A|439
7RQE|1|2a|A|441
7RQE|1|2a|C|442
*
7RQE|1|2a|G|492
7RQE|1|2a|G|493
7RQE|1|2a|U|494
7RQE|1|2a|A|495
7RQE|1|2a|A|496
7RQE|1|2a|U|498
7RQE|1|2a|A|499
7RQE|1|2a|G|500
*
7RQE|1|2a|C|545
7RQE|1|2a|G|546
7RQE|1|2a|A|547
7RQE|1|2a|G|548

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12