J5_7RR5_001
3D structure
- PDB id
- 7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosomal complex bound with Rbg1/Tma46
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.23 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 7RR5|1|C3|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7RR5_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.0915
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
7RR5|1|C1|A|20
7RR5|1|C1|G|21
7RR5|1|C1|G|22
*
7RR5|1|C3|C|35
7RR5|1|C3|G|36
7RR5|1|C3|A|37
7RR5|1|C3|U|38
7RR5|1|C3|G|39
7RR5|1|C3|A|40
7RR5|1|C3|A|41
7RR5|1|C3|G|42
*
7RR5|1|C3|U|102
7RR5|1|C3|G|103
7RR5|1|C3|A|104
7RR5|1|C3|A|105
7RR5|1|C3|C|106
7RR5|1|C3|G|107
*
7RR5|1|C3|C|115
7RR5|1|C3|G|116
*
7RR5|1|C3|C|137
7RR5|1|C3|A|138
7RR5|1|C3|U|139
Current chains
- Chain C1
- 25S rRNA
- Chain C3
- 5.8S rRNA
Nearby chains
- Chain LN
- 60S ribosomal protein L15-A
- Chain LX
- 60S ribosomal protein L25
- Chain Lh
- 60S ribosomal protein L35-A
- Chain Lj
- Ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
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