3D structure

PDB id
7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosomal complex bound with Rbg1/Tma46
Experimental method
ELECTRON MICROSCOPY
Resolution
3.23 Å

Loop

Sequence
AGG*CGAUGAAG*UGAACG*CG*CAU
Length
22 nucleotides
Bulged bases
7RR5|1|C3|U|38
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7RR5_001 not in the Motif Atlas
Homologous match to J5_8P9A_010
Geometric discrepancy: 0.0915
The information below is about J5_8P9A_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_01737.2
Basepair signature
cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

7RR5|1|C1|A|20
7RR5|1|C1|G|21
7RR5|1|C1|G|22
*
7RR5|1|C3|C|35
7RR5|1|C3|G|36
7RR5|1|C3|A|37
7RR5|1|C3|U|38
7RR5|1|C3|G|39
7RR5|1|C3|A|40
7RR5|1|C3|A|41
7RR5|1|C3|G|42
*
7RR5|1|C3|U|102
7RR5|1|C3|G|103
7RR5|1|C3|A|104
7RR5|1|C3|A|105
7RR5|1|C3|C|106
7RR5|1|C3|G|107
*
7RR5|1|C3|C|115
7RR5|1|C3|G|116
*
7RR5|1|C3|C|137
7RR5|1|C3|A|138
7RR5|1|C3|U|139

Current chains

Chain C1
25S rRNA
Chain C3
5.8S rRNA

Nearby chains

Chain LN
60S ribosomal protein L15-A
Chain LX
60S ribosomal protein L25
Chain Lh
60S ribosomal protein L35-A
Chain Lj
Ribosomal protein L37
Chain Ll
60S ribosomal protein L39

Coloring options:


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