3D structure

PDB id
7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosomal complex bound with Rbg1/Tma46
Experimental method
ELECTRON MICROSCOPY
Resolution
3.23 Å

Loop

Sequence
GGAGUC*GGAC*GUUC*GC*GCAGAUC
Length
23 nucleotides
Bulged bases
7RR5|1|C1|U|1436
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7RR5_002 not in the Motif Atlas
Homologous match to J5_8C3A_002
Geometric discrepancy: 0.085
The information below is about J5_8C3A_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7RR5|1|C1|G|658
7RR5|1|C1|G|659
7RR5|1|C1|A|660
7RR5|1|C1|G|661
7RR5|1|C1|U|662
7RR5|1|C1|C|663
*
7RR5|1|C1|G|799
7RR5|1|C1|G|800
7RR5|1|C1|A|801
7RR5|1|C1|C|802
*
7RR5|1|C1|G|941
7RR5|1|C1|U|942
7RR5|1|C1|U|943
7RR5|1|C1|C|944
*
7RR5|1|C1|G|1375
7RR5|1|C1|C|1376
*
7RR5|1|C1|G|1431
7RR5|1|C1|C|1432
7RR5|1|C1|A|1433
7RR5|1|C1|G|1434
7RR5|1|C1|A|1435
7RR5|1|C1|U|1436
7RR5|1|C1|C|1437

Current chains

Chain C1
25S rRNA

Nearby chains

Chain C3
5.8S ribosomal RNA; 5.8S rRNA
Chain LC
RPL4A isoform 1
Chain LL
60S ribosomal protein L13
Chain LN
60S ribosomal protein L15-A
Chain La
60S ribosomal protein L28
Chain Le
RPL32 isoform 1

Coloring options:


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