J5_7RYG_006
3D structure
- PDB id
- 7RYG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 7RYG|1|A|U|2072, 7RYG|1|A|G|2424, 7RYG|1|A|G|2425, 7RYG|1|A|A|2426, 7RYG|1|A|A|2430
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7RYG_006 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.11
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7RYG|1|A|U|2070
7RYG|1|A|U|2071
7RYG|1|A|U|2072
7RYG|1|A|A|2073
*
7RYG|1|A|U|2239
7RYG|1|A|U|2240
7RYG|1|A|U|2241
7RYG|1|A|G|2242
*
7RYG|1|A|C|2254
7RYG|1|A|U|2255
*
7RYG|1|A|A|2277
7RYG|1|A|G|2278
*
7RYG|1|A|C|2423
7RYG|1|A|G|2424
7RYG|1|A|G|2425
7RYG|1|A|A|2426
7RYG|1|A|U|2427
7RYG|1|A|A|2428
7RYG|1|A|A|2429
7RYG|1|A|A|2430
7RYG|1|A|A|2431
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L35
- Chain C
- 50S ribosomal protein L2
- Chain K
- 50S ribosomal protein L15
- Chain V
- 50S ribosomal protein L27
- Chain W
- 50S ribosomal protein L28
- Chain v
- Transfer RNA; tRNA
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