J5_7RYG_009

3D structure

PDB id

7RYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

7RYG|1|a|A|105, 7RYG|1|a|C|348

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7RYG_009 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.117

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7RYG|1|a|C|60
7RYG|1|a|A|61
7RYG|1|a|A|62
7RYG|1|a|G|63
*
7RYG|1|a|C|102
7RYG|1|a|G|103
7RYG|1|a|G|104
7RYG|1|a|A|105
7RYG|1|a|C|106
7RYG|1|a|G|107
7RYG|1|a|G|108
7RYG|1|a|G|109
*
7RYG|1|a|C|310
7RYG|1|a|A|311
7RYG|1|a|C|312
*
7RYG|1|a|G|333
7RYG|1|a|A|334
7RYG|1|a|C|335
*
7RYG|1|a|G|346
7RYG|1|a|G|347
7RYG|1|a|C|348
7RYG|1|a|A|349
7RYG|1|a|G|350

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L14

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20