J5_7RYH_008

3D structure

PDB id

7RYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: Empty 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

7RYH|1|a|A|105, 7RYH|1|a|C|348

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7RYH_008 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.1023

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7RYH|1|a|C|60
7RYH|1|a|A|61
7RYH|1|a|A|62
7RYH|1|a|G|63
*
7RYH|1|a|C|102
7RYH|1|a|G|103
7RYH|1|a|G|104
7RYH|1|a|A|105
7RYH|1|a|C|106
7RYH|1|a|G|107
7RYH|1|a|G|108
7RYH|1|a|G|109
*
7RYH|1|a|C|310
7RYH|1|a|A|311
7RYH|1|a|C|312
*
7RYH|1|a|G|333
7RYH|1|a|A|334
7RYH|1|a|C|335
*
7RYH|1|a|G|346
7RYH|1|a|G|347
7RYH|1|a|C|348
7RYH|1|a|A|349
7RYH|1|a|G|350

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L14

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20