J5_7S1H_004

3D structure

PDB id

7S1H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic linezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7S1H|1|I|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7S1H_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.076

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7S1H|1|I|C|47
7S1H|1|I|G|48
7S1H|1|I|A|49
7S1H|1|I|U|50
7S1H|1|I|G|51
7S1H|1|I|A|52
7S1H|1|I|A|53
7S1H|1|I|G|54
*
7S1H|1|I|C|116
7S1H|1|I|G|117
7S1H|1|I|A|118
7S1H|1|I|A|119
7S1H|1|I|U|120
7S1H|1|I|G|121
*
7S1H|1|I|C|130
7S1H|1|I|A|131
*
7S1H|1|I|U|148
7S1H|1|I|A|149
7S1H|1|I|U|150
*
7S1H|1|I|A|176
7S1H|1|I|G|177
7S1H|1|I|G|178

Current chains

Chain I

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L34