J5_7S1H_008

3D structure

PDB id

7S1H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic linezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GU*GUUUAG*CGGUCC

Length

35 nucleotides

Bulged bases

7S1H|1|I|A|2448, 7S1H|1|I|H2U|2449, 7S1H|1|I|U|2609

QA status

Modified nucleotides: H2U, 2MA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7S1H|1|I|G|2057
7S1H|1|I|A|2058
7S1H|1|I|A|2059
7S1H|1|I|A|2060
7S1H|1|I|G|2061
7S1H|1|I|A|2062||A
7S1H|1|I|C|2063
7S1H|1|I|C|2064
*
7S1H|1|I|G|2446
7S1H|1|I|G|2447
7S1H|1|I|A|2448
7S1H|1|I|H2U|2449
7S1H|1|I|A|2450
7S1H|1|I|A|2451
7S1H|1|I|C|2452
7S1H|1|I|A|2453
*
7S1H|1|I|U|2500
7S1H|1|I|C|2501
7S1H|1|I|G|2502
7S1H|1|I|2MA|2503
7S1H|1|I|PSU|2504
7S1H|1|I|G|2505
7S1H|1|I|U|2506||A
*
7S1H|1|I|G|2583
7S1H|1|I|U|2584
7S1H|1|I|U|2585
7S1H|1|I|U|2586
7S1H|1|I|A|2587
7S1H|1|I|G|2588
*
7S1H|1|I|C|2606
7S1H|1|I|G|2607
7S1H|1|I|G|2608
7S1H|1|I|U|2609
7S1H|1|I|C|2610
7S1H|1|I|C|2611

Current chains

Chain I

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain L

50S ribosomal protein L3

Chain M

50S ribosomal protein L4

Chain T

50S ribosomal protein L15

Chain U

50S ribosomal protein L16

Chain a

50S ribosomal protein L22

Chain i

50S ribosomal protein L32