J5_7S9U_001

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

7S9U|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7S9U_001 not in the Motif Atlas

Homologous match to J5_4WF9_001

Geometric discrepancy: 0.1105

The information below is about J5_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.2

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7S9U|1|A|C|47
7S9U|1|A|G|48
7S9U|1|A|A|49
7S9U|1|A|U|50
7S9U|1|A|G|51
7S9U|1|A|A|52
7S9U|1|A|A|53
7S9U|1|A|G|54
*
7S9U|1|A|C|115
7S9U|1|A|G|116
7S9U|1|A|A|117
7S9U|1|A|A|118
7S9U|1|A|U|119
7S9U|1|A|G|120
*
7S9U|1|A|C|129
7S9U|1|A|A|130
*
7S9U|1|A|U|149
7S9U|1|A|A|150
7S9U|1|A|U|151
*
7S9U|1|A|A|178
7S9U|1|A|A|179
7S9U|1|A|G|180

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain T

50S ribosomal protein L23

Chain d

50S ribosomal protein L34