J5_7SAE_005

3D structure

PDB id

7SAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR70P Class1 ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCAAAAUGA*UG*CC*GUGAAUAGG*CAC

Length

25 nucleotides

Bulged bases

7SAE|1|A|G|1787, 7SAE|1|A|G|1792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7SAE_005 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.1666

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7SAE|1|A|G|1719
7SAE|1|A|C|1720
7SAE|1|A|A|1721
7SAE|1|A|A|1722
7SAE|1|A|A|1723
7SAE|1|A|A|1724
7SAE|1|A|U|1725
7SAE|1|A|G|1726
7SAE|1|A|A|1727
*
7SAE|1|A|U|1751
7SAE|1|A|G|1752
*
7SAE|1|A|C|1780
7SAE|1|A|C|1781
*
7SAE|1|A|G|1785
7SAE|1|A|U|1786
7SAE|1|A|G|1787
7SAE|1|A|A|1788
7SAE|1|A|A|1789
7SAE|1|A|U|1790
7SAE|1|A|A|1791
7SAE|1|A|G|1792
7SAE|1|A|G|1793
*
7SAE|1|A|C|2017
7SAE|1|A|A|2018
7SAE|1|A|C|2019

Current chains

Chain A

RNA (2434-MER)

Nearby chains

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19