J5_7SUK_001
3D structure
- PDB id
- 7SUK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.99 Å
Loop
- Sequence
- GAUUACUAG*CAAUCUAUUUCAAAGAAUUCAAACUUG*CUCUCAA*UAG*CAAAAGAGC
- Length
- 55 nucleotides
- Bulged bases
- 7SUK|1|L0|U|294, 7SUK|1|L0|A|295, 7SUK|1|L0|C|296, 7SUK|1|L0|U|297, 7SUK|1|L0|A|298, 7SUK|1|L0|A|309, 7SUK|1|L0|U|310, 7SUK|1|L0|C|311, 7SUK|1|L0|U|312, 7SUK|1|L0|A|313, 7SUK|1|L0|A|322, 7SUK|1|L0|A|329, 7SUK|1|L0|C|330, 7SUK|1|L0|U|331, 7SUK|1|L0|U|332, 7SUK|1|L0|A|396, 7SUK|1|L0|A|461, 7SUK|1|L2|A|60, 7SUK|1|L2|G|61
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7SUK|1|L0|G|291
7SUK|1|L0|A|292
7SUK|1|L0|U|293
7SUK|1|L0|U|294
7SUK|1|L0|A|295
7SUK|1|L0|C|296
7SUK|1|L0|U|297
7SUK|1|L0|A|298
7SUK|1|L0|G|299
*
7SUK|1|L0|C|307
7SUK|1|L0|A|308
7SUK|1|L0|A|309
7SUK|1|L0|U|310
7SUK|1|L0|C|311
7SUK|1|L0|U|312
7SUK|1|L0|A|313
7SUK|1|L0|U|314
7SUK|1|L0|U|315
7SUK|1|L0|U|316
7SUK|1|L0|C|317
7SUK|1|L0|A|318
7SUK|1|L0|A|319
7SUK|1|L0|A|320
7SUK|1|L0|G|321
7SUK|1|L0|A|322
7SUK|1|L0|A|323
7SUK|1|L0|U|324
7SUK|1|L0|U|325
7SUK|1|L0|C|326
7SUK|1|L0|A|327
7SUK|1|L0|A|328
7SUK|1|L0|A|329
7SUK|1|L0|C|330
7SUK|1|L0|U|331
7SUK|1|L0|U|332
7SUK|1|L0|G|333
*
7SUK|1|L0|C|391
7SUK|1|L0|U|392
7SUK|1|L0|C|393
7SUK|1|L0|U|394
7SUK|1|L0|C|395
7SUK|1|L0|A|396
7SUK|1|L0|A|397
*
7SUK|1|L0|U|460
7SUK|1|L0|A|461
7SUK|1|L0|G|462
*
7SUK|1|L2|C|54
7SUK|1|L2|A|55
7SUK|1|L2|A|56
7SUK|1|L2|A|57
7SUK|1|L2|A|58
7SUK|1|L2|G|59
7SUK|1|L2|A|60
7SUK|1|L2|G|61
7SUK|1|L2|C|62
Current chains
- Chain L0
- 5' ETS
- Chain L2
- U3 snoRNA
Nearby chains
- Chain LO
- Periodic tryptophan protein 2
- Chain LS
- U3 small nucleolar RNA-associated protein 18
- Chain LT
- U3 small nucleolar RNA-associated protein 21
- Chain LW
- U3 small nucleolar RNA-associated protein 7
- Chain LZ
- U3 small nucleolar ribonucleoprotein protein IMP3
- Chain NA
- U3 small nucleolar RNA-associated protein MPP10
- Chain SB
- Nucleolar protein 58
- Chain SI
- Ribosome biogenesis protein BMS1
- Chain SL
- rRNA-processing protein FCF1
- Chain SM
- U3 small nucleolar ribonucleoprotein protein IMP4
- Chain SY
- U3 small nucleolar RNA-associated protein 11
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