J5_7SYH_003

3D structure

PDB id

7SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUCGCUC*GGG*UGCAUUU*AACCUCGGGCCG*CGACC

Length

34 nucleotides

Bulged bases

7SYH|1|2|G|126, 7SYH|1|2|C|127, 7SYH|1|2|U|305, 7SYH|1|2|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYH|1|2|G|123
7SYH|1|2|U|124
7SYH|1|2|C|125
7SYH|1|2|G|126
7SYH|1|2|C|127
7SYH|1|2|U|128
7SYH|1|2|C|129
*
7SYH|1|2|G|183
7SYH|1|2|G|184
7SYH|1|2|G|185
*
7SYH|1|2|U|214
7SYH|1|2|G|215
7SYH|1|2|C|216
7SYH|1|2|A|217
7SYH|1|2|U|218
7SYH|1|2|U|219
7SYH|1|2|U|220
*
7SYH|1|2|A|301
7SYH|1|2|A|302
7SYH|1|2|C|303
7SYH|1|2|C|304
7SYH|1|2|U|305
7SYH|1|2|C|306
7SYH|1|2|G|307
7SYH|1|2|G|308
7SYH|1|2|G|309
7SYH|1|2|C|310
7SYH|1|2|C|311
7SYH|1|2|G|312
*
7SYH|1|2|C|337
7SYH|1|2|G|338
7SYH|1|2|A|339
7SYH|1|2|C|340
7SYH|1|2|C|341

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain H

eS6

Chain J

eS8