J5_7SYH_004

3D structure

PDB id

7SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUUGU*AAAUAACAAU*AAUUGGAAUG*CCAUU*AAUAG

Length

35 nucleotides

Bulged bases

7SYH|1|2|A|555, 7SYH|1|2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYH|1|2|C|30
7SYH|1|2|U|31
7SYH|1|2|U|32
7SYH|1|2|G|33
7SYH|1|2|U|34
*
7SYH|1|2|A|521
7SYH|1|2|A|522
7SYH|1|2|A|523
7SYH|1|2|U|524
7SYH|1|2|A|525
7SYH|1|2|A|526
7SYH|1|2|C|527
7SYH|1|2|A|528
7SYH|1|2|A|529
7SYH|1|2|U|530
*
7SYH|1|2|A|554
7SYH|1|2|A|555
7SYH|1|2|U|556
7SYH|1|2|U|557
7SYH|1|2|G|558
7SYH|1|2|G|559
7SYH|1|2|A|560
7SYH|1|2|A|561
7SYH|1|2|U|562
7SYH|1|2|G|563
*
7SYH|1|2|C|592
7SYH|1|2|C|593
7SYH|1|2|A|594
7SYH|1|2|U|595
7SYH|1|2|U|596
*
7SYH|1|2|A|640
7SYH|1|2|A|641
7SYH|1|2|U|642
7SYH|1|2|A|643
7SYH|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Y

uS12

Chain f

eS30