J5_7SYI_002

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUUGU*AAAUAACA*UGGAAUGAG*CGAGGAUCCAU*AUAG

Length

37 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYI|1|2|C|30
7SYI|1|2|U|31
7SYI|1|2|U|32
7SYI|1|2|G|33
7SYI|1|2|U|34
*
7SYI|1|2|A|521
7SYI|1|2|A|522
7SYI|1|2|A|523
7SYI|1|2|U|524
7SYI|1|2|A|525
7SYI|1|2|A|526
7SYI|1|2|C|527
7SYI|1|2|A|528
*
7SYI|1|2|U|557
7SYI|1|2|G|558
7SYI|1|2|G|559
7SYI|1|2|A|560
7SYI|1|2|A|561
7SYI|1|2|U|562
7SYI|1|2|G|563
7SYI|1|2|A|564
7SYI|1|2|G|565
*
7SYI|1|2|C|585
7SYI|1|2|G|586
7SYI|1|2|A|587
7SYI|1|2|G|588
7SYI|1|2|G|589
7SYI|1|2|A|590
7SYI|1|2|U|591
7SYI|1|2|C|592
7SYI|1|2|C|593
7SYI|1|2|A|594
7SYI|1|2|U|595
*
7SYI|1|2|A|641
7SYI|1|2|U|642
7SYI|1|2|A|643
7SYI|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Y

uS12

Chain f

eS30