J5_7SYI_003

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CAUGUCUAAG*CUGCGAAUGGC*GAG*CACAU*AAGGCAG

Length

36 nucleotides

Bulged bases

7SYI|1|2|U|59, 7SYI|1|2|A|92, 7SYI|1|2|C|472

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYI|1|2|C|53
7SYI|1|2|A|54
7SYI|1|2|U|55
7SYI|1|2|G|56
7SYI|1|2|U|57
7SYI|1|2|C|58
7SYI|1|2|U|59
7SYI|1|2|A|60
7SYI|1|2|A|61
7SYI|1|2|G|62
*
7SYI|1|2|C|86
7SYI|1|2|U|87
7SYI|1|2|G|88
7SYI|1|2|C|89
7SYI|1|2|G|90
7SYI|1|2|A|91
7SYI|1|2|A|92
7SYI|1|2|U|93
7SYI|1|2|G|94
7SYI|1|2|G|95
7SYI|1|2|C|96
*
7SYI|1|2|G|434
7SYI|1|2|A|435
7SYI|1|2|G|436
*
7SYI|1|2|C|457
7SYI|1|2|A|458
7SYI|1|2|C|459
7SYI|1|2|A|460
7SYI|1|2|U|461
*
7SYI|1|2|A|468
7SYI|1|2|A|469
7SYI|1|2|G|470
7SYI|1|2|G|471
7SYI|1|2|C|472
7SYI|1|2|A|473
7SYI|1|2|G|474

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain H

eS6

Chain J

eS8

Chain K

uS4

Chain Z

40S ribosomal protein S24