J5_7SYJ_004

3D structure

PDB id

7SYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CUUGU*AAAUAACA*UGGAAUG*CCAUU*AAUAG

Length

30 nucleotides

Bulged bases

7SYJ|1|2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYJ|1|2|C|30
7SYJ|1|2|U|31
7SYJ|1|2|U|32
7SYJ|1|2|G|33
7SYJ|1|2|U|34
*
7SYJ|1|2|A|521
7SYJ|1|2|A|522
7SYJ|1|2|A|523
7SYJ|1|2|U|524
7SYJ|1|2|A|525
7SYJ|1|2|A|526
7SYJ|1|2|C|527
7SYJ|1|2|A|528
*
7SYJ|1|2|U|557
7SYJ|1|2|G|558
7SYJ|1|2|G|559
7SYJ|1|2|A|560
7SYJ|1|2|A|561
7SYJ|1|2|U|562
7SYJ|1|2|G|563
*
7SYJ|1|2|C|592
7SYJ|1|2|C|593
7SYJ|1|2|A|594
7SYJ|1|2|U|595
7SYJ|1|2|U|596
*
7SYJ|1|2|A|640
7SYJ|1|2|A|641
7SYJ|1|2|U|642
7SYJ|1|2|A|643
7SYJ|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Y

uS12

Chain f

eS30