J5_7SYR_005

3D structure

PDB id

7SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

7SYR|1|2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7SYR_005 not in the Motif Atlas

Homologous match to J5_8CRE_018

Geometric discrepancy: 0.1319

The information below is about J5_8CRE_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_04786.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7SYR|1|2|C|30
7SYR|1|2|U|31
7SYR|1|2|U|32
7SYR|1|2|G|33
7SYR|1|2|U|34
*
7SYR|1|2|A|521
7SYR|1|2|A|522
7SYR|1|2|A|523
7SYR|1|2|U|524
7SYR|1|2|A|525
7SYR|1|2|A|526
7SYR|1|2|C|527
*
7SYR|1|2|G|558
7SYR|1|2|G|559
7SYR|1|2|A|560
7SYR|1|2|A|561
7SYR|1|2|U|562
7SYR|1|2|G|563
*
7SYR|1|2|C|592
7SYR|1|2|C|593
7SYR|1|2|A|594
7SYR|1|2|U|595
*
7SYR|1|2|A|641
7SYR|1|2|U|642
7SYR|1|2|A|643
7SYR|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Y

uS12

Chain f

eS30