J5_7SYS_005

3D structure

PDB id

7SYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

7SYS|1|2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7SYS_005 not in the Motif Atlas

Homologous match to J5_8CRE_018

Geometric discrepancy: 0.1143

The information below is about J5_8CRE_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_80702.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7SYS|1|2|C|30
7SYS|1|2|U|31
7SYS|1|2|U|32
7SYS|1|2|G|33
7SYS|1|2|U|34
*
7SYS|1|2|A|521
7SYS|1|2|A|522
7SYS|1|2|A|523
7SYS|1|2|U|524
7SYS|1|2|A|525
7SYS|1|2|A|526
7SYS|1|2|C|527
*
7SYS|1|2|G|558
7SYS|1|2|G|559
7SYS|1|2|A|560
7SYS|1|2|A|561
7SYS|1|2|U|562
7SYS|1|2|G|563
*
7SYS|1|2|C|592
7SYS|1|2|C|593
7SYS|1|2|A|594
7SYS|1|2|U|595
*
7SYS|1|2|A|641
7SYS|1|2|U|642
7SYS|1|2|A|643
7SYS|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Y

uS12

Chain f

eS30