J5_7SYV_003
3D structure
- PDB id
- 7SYV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAUGUCUAAG*CUGCGAAUGGC*GAG*CAC*GGCAG
- Length
- 32 nucleotides
- Bulged bases
- 7SYV|1|2|U|55, 7SYV|1|2|A|92, 7SYV|1|2|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7SYV|1|2|C|53
7SYV|1|2|A|54
7SYV|1|2|U|55
7SYV|1|2|G|56
7SYV|1|2|U|57
7SYV|1|2|C|58
7SYV|1|2|U|59
7SYV|1|2|A|60
7SYV|1|2|A|61
7SYV|1|2|G|62
*
7SYV|1|2|C|86
7SYV|1|2|U|87
7SYV|1|2|G|88
7SYV|1|2|C|89
7SYV|1|2|G|90
7SYV|1|2|A|91
7SYV|1|2|A|92
7SYV|1|2|U|93
7SYV|1|2|G|94
7SYV|1|2|G|95
7SYV|1|2|C|96
*
7SYV|1|2|G|434
7SYV|1|2|A|435
7SYV|1|2|G|436
*
7SYV|1|2|C|457
7SYV|1|2|A|458
7SYV|1|2|C|459
*
7SYV|1|2|G|470
7SYV|1|2|G|471
7SYV|1|2|C|472
7SYV|1|2|A|473
7SYV|1|2|G|474
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain F
- 40S ribosomal protein S4
- Chain H
- eS6
- Chain J
- eS8
- Chain K
- uS4
- Chain Z
- 40S ribosomal protein S24
- Chain x
- Eukaryotic translation initiation factor 5B
Coloring options: