J5_7SYW_005
3D structure
- PDB id
- 7SYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG
- Length
- 26 nucleotides
- Bulged bases
- 7SYW|1|2|C|593
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7SYW_005 not in the Motif Atlas
- Homologous match to J5_8CRE_018
- Geometric discrepancy: 0.1332
- The information below is about J5_8CRE_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_04786.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7SYW|1|2|C|30
7SYW|1|2|U|31
7SYW|1|2|U|32
7SYW|1|2|G|33
7SYW|1|2|U|34
*
7SYW|1|2|A|521
7SYW|1|2|A|522
7SYW|1|2|A|523
7SYW|1|2|U|524
7SYW|1|2|A|525
7SYW|1|2|A|526
7SYW|1|2|C|527
*
7SYW|1|2|G|558
7SYW|1|2|G|559
7SYW|1|2|A|560
7SYW|1|2|A|561
7SYW|1|2|U|562
7SYW|1|2|G|563
*
7SYW|1|2|C|592
7SYW|1|2|C|593
7SYW|1|2|A|594
7SYW|1|2|U|595
*
7SYW|1|2|A|641
7SYW|1|2|U|642
7SYW|1|2|A|643
7SYW|1|2|G|644
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain K
- uS4
- Chain Y
- uS12
- Chain f
- eS30
- Chain x
- Eukaryotic translation initiation factor 5B
Coloring options: