J5_7TOO_003
3D structure
- PDB id
- 7TOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 7TOO|1|A25S|U|719, 7TOO|1|A25S|A|784, 7TOO|1|A25S|G|785
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7TOO_003 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.0761
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_23272.1
- Basepair signature
- cWW-F-F-F-F-cWW-cWW-F-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7TOO|1|A25S|C|675
7TOO|1|A25S|G|676
7TOO|1|A25S|A|677
7TOO|1|A25S|G|678
*
7TOO|1|A25S|C|702
7TOO|1|A25S|G|703
7TOO|1|A25S|U|704
7TOO|1|A25S|A|705
7TOO|1|A25S|A|706
*
7TOO|1|A25S|U|713
7TOO|1|A25S|G|714
7TOO|1|A25S|A|715
7TOO|1|A25S|A|716
7TOO|1|A25S|C|717
7TOO|1|A25S|G|718
7TOO|1|A25S|U|719
7TOO|1|A25S|A|720
7TOO|1|A25S|G|721
*
7TOO|1|A25S|C|749
7TOO|1|A25S|G|750
7TOO|1|A25S|A|751
*
7TOO|1|A25S|U|782
7TOO|1|A25S|A|783
7TOO|1|A25S|A|784
7TOO|1|A25S|G|785
7TOO|1|A25S|A|786
7TOO|1|A25S|G|787
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain AL04
- RPL4A isoform 1
- Chain AL13
- 60S ribosomal protein L13-A
- Chain AL18
- 60S ribosomal protein L18-A
- Chain AL28
- 60S ribosomal protein L28
- Chain AL29
- RPL29 isoform 1
- Chain AL36
- 60S ribosomal protein L36-A
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