3D structure

PDB id
7TOP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GGAGUC*GGAC*GUUC*GC*GCAGAUC
Length
23 nucleotides
Bulged bases
7TOP|1|A25S|U|1436
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7TOP_002 not in the Motif Atlas
Homologous match to J5_8C3A_002
Geometric discrepancy: 0.0555
The information below is about J5_8C3A_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7TOP|1|A25S|G|658
7TOP|1|A25S|G|659
7TOP|1|A25S|A|660
7TOP|1|A25S|G|661
7TOP|1|A25S|U|662
7TOP|1|A25S|C|663
*
7TOP|1|A25S|G|799
7TOP|1|A25S|G|800
7TOP|1|A25S|A|801
7TOP|1|A25S|C|802
*
7TOP|1|A25S|G|941
7TOP|1|A25S|U|942
7TOP|1|A25S|U|943
7TOP|1|A25S|C|944
*
7TOP|1|A25S|G|1375
7TOP|1|A25S|C|1376
*
7TOP|1|A25S|G|1431
7TOP|1|A25S|C|1432
7TOP|1|A25S|A|1433
7TOP|1|A25S|G|1434
7TOP|1|A25S|A|1435
7TOP|1|A25S|U|1436
7TOP|1|A25S|C|1437

Current chains

Chain A25S
25S rRNA

Nearby chains

Chain A58S
5.8S ribosomal RNA; 5.8S rRNA
Chain AL04
RPL4A isoform 1
Chain AL13
60S ribosomal protein L13-A
Chain AL15
60S ribosomal protein L15-A
Chain AL28
60S ribosomal protein L28
Chain AL32
RPL32 isoform 1

Coloring options:


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