J5_7TOP_002
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 7TOP|1|A25S|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7TOP_002 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.0555
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7TOP|1|A25S|G|658
7TOP|1|A25S|G|659
7TOP|1|A25S|A|660
7TOP|1|A25S|G|661
7TOP|1|A25S|U|662
7TOP|1|A25S|C|663
*
7TOP|1|A25S|G|799
7TOP|1|A25S|G|800
7TOP|1|A25S|A|801
7TOP|1|A25S|C|802
*
7TOP|1|A25S|G|941
7TOP|1|A25S|U|942
7TOP|1|A25S|U|943
7TOP|1|A25S|C|944
*
7TOP|1|A25S|G|1375
7TOP|1|A25S|C|1376
*
7TOP|1|A25S|G|1431
7TOP|1|A25S|C|1432
7TOP|1|A25S|A|1433
7TOP|1|A25S|G|1434
7TOP|1|A25S|A|1435
7TOP|1|A25S|U|1436
7TOP|1|A25S|C|1437
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain A58S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AL04
- RPL4A isoform 1
- Chain AL13
- 60S ribosomal protein L13-A
- Chain AL15
- 60S ribosomal protein L15-A
- Chain AL28
- 60S ribosomal protein L28
- Chain AL32
- RPL32 isoform 1
Coloring options: