J5_7TOP_006

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUGA*UUUG*CA*UG*CAGAAAA

Length

19 nucleotides

Bulged bases

7TOP|1|A25S|G|2418, 7TOP|1|A25S|A|2799, 7TOP|1|A25S|G|2800, 7TOP|1|A25S|A|2801, 7TOP|1|A25S|A|2802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7TOP_006 not in the Motif Atlas

Homologous match to J5_8C3A_006

Geometric discrepancy: 0.0729

The information below is about J5_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TOP|1|A25S|U|2416
7TOP|1|A25S|U|2417
7TOP|1|A25S|G|2418
7TOP|1|A25S|A|2419
*
7TOP|1|A25S|U|2611
7TOP|1|A25S|U|2612
7TOP|1|A25S|U|2613
7TOP|1|A25S|G|2614
*
7TOP|1|A25S|C|2627
7TOP|1|A25S|A|2628
*
7TOP|1|A25S|U|2650
7TOP|1|A25S|G|2651
*
7TOP|1|A25S|C|2798
7TOP|1|A25S|A|2799
7TOP|1|A25S|G|2800
7TOP|1|A25S|A|2801
7TOP|1|A25S|A|2802
7TOP|1|A25S|A|2803
7TOP|1|A25S|A|2804

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L2-A

Chain AL15

60S ribosomal protein L15-A

Chain AL18

60S ribosomal protein L18-A

Chain AL21

60S ribosomal protein L21-A

Chain AL28

60S ribosomal protein L28

Chain AL29

RPL29 isoform 1

Chain AL42

60S ribosomal protein L42-A

Chain APTN

Transfer RNA; tRNA