J5_7TOQ_004

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

7TOQ|1|A18S|G|126, 7TOQ|1|A18S|C|127

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TOQ|1|A18S|G|123
7TOQ|1|A18S|U|124
7TOQ|1|A18S|C|125
7TOQ|1|A18S|G|126
7TOQ|1|A18S|C|127
7TOQ|1|A18S|U|128
7TOQ|1|A18S|C|129
*
7TOQ|1|A18S|G|183
7TOQ|1|A18S|G|184
7TOQ|1|A18S|G|185
*
7TOQ|1|A18S|U|214
7TOQ|1|A18S|G|215
*
7TOQ|1|A18S|C|310
7TOQ|1|A18S|C|311
7TOQ|1|A18S|G|312
*
7TOQ|1|A18S|C|337
7TOQ|1|A18S|G|338
7TOQ|1|A18S|A|339
7TOQ|1|A18S|C|340
7TOQ|1|A18S|C|341

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS04

40S ribosomal protein S4

Chain AS06

40S ribosomal protein S6

Chain AS08

40S ribosomal protein S8