J5_7TOQ_006
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUG*CGAUGAAG*CGAACG*CG*UAC
- Length
- 22 nucleotides
- Bulged bases
- 7TOQ|1|A58S|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7TOQ_006 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.1264
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
7TOQ|1|A25S|G|19
7TOQ|1|A25S|U|20
7TOQ|1|A25S|G|21
*
7TOQ|1|A58S|C|35
7TOQ|1|A58S|G|36
7TOQ|1|A58S|A|37
7TOQ|1|A58S|U|38
7TOQ|1|A58S|G|39
7TOQ|1|A58S|A|40
7TOQ|1|A58S|A|41
7TOQ|1|A58S|G|42
*
7TOQ|1|A58S|C|101
7TOQ|1|A58S|G|102
7TOQ|1|A58S|A|103
7TOQ|1|A58S|A|104
7TOQ|1|A58S|C|105
7TOQ|1|A58S|G|106
*
7TOQ|1|A58S|C|113
7TOQ|1|A58S|G|114
*
7TOQ|1|A58S|U|136
7TOQ|1|A58S|A|137
7TOQ|1|A58S|C|138
Current chains
- Chain A25S
- 28S rRNA
- Chain A58S
- 5.8S rRNA
Nearby chains
- Chain AL15
- 60S ribosomal protein L15
- Chain AL25
- uL23
- Chain AL35
- 60S ribosomal protein L35
- Chain AL37
- 60S ribosomal protein L37
Coloring options: