J5_7TOQ_009
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 7TOQ|1|A25S|A|3908, 7TOQ|1|A25S|A|4394, 7TOQ|1|A25S|U|4555
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7TOQ|1|A25S|A|3903
7TOQ|1|A25S|G|3904
7TOQ|1|A25S|A|3905
7TOQ|1|A25S|A|3906
7TOQ|1|A25S|G|3907
7TOQ|1|A25S|A|3908
7TOQ|1|A25S|C|3909
7TOQ|1|A25S|C|3910
*
7TOQ|1|A25S|G|4392
7TOQ|1|A25S|G|4393
7TOQ|1|A25S|A|4394
7TOQ|1|A25S|U|4395
7TOQ|1|A25S|A|4396
7TOQ|1|A25S|A|4397
7TOQ|1|A25S|C|4398
7TOQ|1|A25S|U|4399
7TOQ|1|A25S|G|4400
*
7TOQ|1|A25S|C|4444
7TOQ|1|A25S|U|4445
7TOQ|1|A25S|U|4446
7TOQ|1|A25S|C|4447
7TOQ|1|A25S|G|4448
7TOQ|1|A25S|A|4449
7TOQ|1|A25S|U|4450
7TOQ|1|A25S|G|4451
7TOQ|1|A25S|U|4452
7TOQ|1|A25S|C|4453
*
7TOQ|1|A25S|G|4528
7TOQ|1|A25S|G|4529
7TOQ|1|A25S|U|4530
7TOQ|1|A25S|U|4531
7TOQ|1|A25S|U|4532
7TOQ|1|A25S|A|4533
7TOQ|1|A25S|G|4534
*
7TOQ|1|A25S|U|4552
7TOQ|1|A25S|A|4553
7TOQ|1|A25S|G|4554
7TOQ|1|A25S|U|4555
7TOQ|1|A25S|U|4556
7TOQ|1|A25S|U|4557
Current chains
- Chain A25S
- 28S rRNA
Nearby chains
- Chain AL02
- uL2
- Chain AL03
- 60S ribosomal protein L3
- Chain AL04
- 60S ribosomal protein L4
- Chain AL29
- eL29
- Chain PR
- PR20, ALS/FTD dipeptide repeat protein
Coloring options: