J5_7TOR_008

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAGUC*GGAC*GUUC*GCC*GCAGAUC

Length

24 nucleotides

Bulged bases

7TOR|1|A28S|C|2289, 7TOR|1|A28S|U|2350

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7TOR_008 not in the Motif Atlas

Homologous match to J5_8C3A_002

Geometric discrepancy: 0.0861

The information below is about J5_8C3A_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TOR|1|A28S|G|1335
7TOR|1|A28S|G|1336
7TOR|1|A28S|A|1337
7TOR|1|A28S|G|1338
7TOR|1|A28S|U|1339
7TOR|1|A28S|C|1340
*
7TOR|1|A28S|G|1516
7TOR|1|A28S|G|1517
7TOR|1|A28S|A|1518
7TOR|1|A28S|C|1519
*
7TOR|1|A28S|G|1658
7TOR|1|A28S|U|1659
7TOR|1|A28S|U|1660
7TOR|1|A28S|C|1661
*
7TOR|1|A28S|G|2288
7TOR|1|A28S|C|2289
7TOR|1|A28S|C|2290
*
7TOR|1|A28S|G|2345
7TOR|1|A28S|C|2346
7TOR|1|A28S|A|2347
7TOR|1|A28S|G|2348
7TOR|1|A28S|A|2349
7TOR|1|A28S|U|2350
7TOR|1|A28S|C|2351

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A58S

5.8S ribosomal RNA; 5.8S rRNA

Chain AL04

60S ribosomal protein L4

Chain AL13

60S ribosomal protein L13

Chain AL15

60S ribosomal protein L15

Chain AL28

60S ribosomal protein L27a

Chain AL32

60S ribosomal protein L32

Chain ALNW

60S ribosomal protein L28