J5_7TTU_001

3D structure

PDB id

7TTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

7TTU|1|1|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7TTU_001 not in the Motif Atlas

Homologous match to J5_4WF9_001

Geometric discrepancy: 0.1134

The information below is about J5_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7TTU|1|1|C|47
7TTU|1|1|G|48
7TTU|1|1|A|49
7TTU|1|1|U|50
7TTU|1|1|G|51
7TTU|1|1|A|52
7TTU|1|1|A|53
7TTU|1|1|G|54
*
7TTU|1|1|C|115
7TTU|1|1|G|116
7TTU|1|1|A|117
7TTU|1|1|A|118
7TTU|1|1|U|119
7TTU|1|1|G|120
*
7TTU|1|1|C|129
7TTU|1|1|A|130
*
7TTU|1|1|U|149
7TTU|1|1|A|150
7TTU|1|1|U|151
*
7TTU|1|1|A|178
7TTU|1|1|A|179
7TTU|1|1|G|180

Current chains

Chain 1

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L34