J5_7U2I_015

3D structure

PDB id

7U2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GCAAGUUGG*UG*CC*GUGAACAGG*CGC

Length

25 nucleotides

Bulged bases

7U2I|1|2A|G|1758, 7U2I|1|2A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7U2I_015 not in the Motif Atlas

Homologous match to J5_7A0S_005

Geometric discrepancy: 0.0713

The information below is about J5_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7U2I|1|2A|G|1674
7U2I|1|2A|C|1675
7U2I|1|2A|A|1676
7U2I|1|2A|A|1677
7U2I|1|2A|G|1678
7U2I|1|2A|U|1679
7U2I|1|2A|U|1680
7U2I|1|2A|G|1681
7U2I|1|2A|G|1682
*
7U2I|1|2A|U|1706
7U2I|1|2A|G|1707
*
7U2I|1|2A|C|1751
7U2I|1|2A|C|1752
*
7U2I|1|2A|G|1756
7U2I|1|2A|U|1757
7U2I|1|2A|G|1758
7U2I|1|2A|A|1759
7U2I|1|2A|A|1760
7U2I|1|2A|C|1761
7U2I|1|2A|A|1762
7U2I|1|2A|G|1763
7U2I|1|2A|G|1764
*
7U2I|1|2A|C|1988
7U2I|1|2A|G|1989
7U2I|1|2A|C|1990

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14

Chain 2T

50S ribosomal protein L19

Chain 2a

Small subunit ribosomal RNA; SSU rRNA