J5_7U2I_018

3D structure

PDB id

7U2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7U2I_018 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0803

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

7U2I|1|2a|C|36
7U2I|1|2a|U|37
7U2I|1|2a|G|38
7U2I|1|2a|G|39
*
7U2I|1|2a|C|403
7U2I|1|2a|U|404
7U2I|1|2a|U|405
7U2I|1|2a|G|406
*
7U2I|1|2a|C|436
7U2I|1|2a|U|437
7U2I|1|2a|G|438
7U2I|1|2a|A|439
7U2I|1|2a|A|441
7U2I|1|2a|C|442
*
7U2I|1|2a|G|492
7U2I|1|2a|G|493
7U2I|1|2a|U|494
7U2I|1|2a|A|495
7U2I|1|2a|A|496
7U2I|1|2a|U|498
7U2I|1|2a|A|499
7U2I|1|2a|G|500
*
7U2I|1|2a|C|545
7U2I|1|2a|G|546
7U2I|1|2a|A|547
7U2I|1|2a|G|548

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12