J5_7U2J_017
3D structure
- PDB id
- 7U2J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 7U2J|1|2A|U|2076, 7U2J|1|2A|G|2428, 7U2J|1|2A|G|2429, 7U2J|1|2A|A|2430, 7U2J|1|2A|U|2431, 7U2J|1|2A|A|2434
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7U2J_017 not in the Motif Atlas
- Homologous match to J5_9DFE_007
- Geometric discrepancy: 0.0502
- The information below is about J5_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.1
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
7U2J|1|2A|U|2074
7U2J|1|2A|U|2075
7U2J|1|2A|U|2076
7U2J|1|2A|A|2077
*
7U2J|1|2A|U|2243
7U2J|1|2A|U|2244
7U2J|1|2A|U|2245
7U2J|1|2A|G|2246
*
7U2J|1|2A|C|2258
7U2J|1|2A|G|2259
*
7U2J|1|2A|C|2281
7U2J|1|2A|G|2282
*
7U2J|1|2A|C|2427
7U2J|1|2A|G|2428
7U2J|1|2A|G|2429
7U2J|1|2A|A|2430
7U2J|1|2A|U|2431
7U2J|1|2A|A|2432
7U2J|1|2A|A|2433
7U2J|1|2A|A|2434
7U2J|1|2A|A|2435
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 20
- 50S ribosomal protein L27
- Chain 21
- 50S ribosomal protein L28
- Chain 26
- 50S ribosomal protein L33
- Chain 2D
- 50S ribosomal protein L2
- Chain 2P
- 50S ribosomal protein L15
- Chain 2y
- Transfer RNA; tRNA
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