J5_7UCK_001
3D structure
- PDB id
- 7UCK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S translation initiation complex with ac4c(-1) mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUG*CGAUGAAG*CGAACG*CG*UAC
- Length
- 22 nucleotides
- Bulged bases
- 7UCK|1|8|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7UCK_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.1038
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
7UCK|1|5|G|19
7UCK|1|5|U|20
7UCK|1|5|G|21
*
7UCK|1|8|C|35
7UCK|1|8|G|36
7UCK|1|8|A|37
7UCK|1|8|U|38
7UCK|1|8|G|39
7UCK|1|8|A|40
7UCK|1|8|A|41
7UCK|1|8|G|42
*
7UCK|1|8|C|101
7UCK|1|8|G|102
7UCK|1|8|A|103
7UCK|1|8|A|104
7UCK|1|8|C|105
7UCK|1|8|G|106
*
7UCK|1|8|C|113
7UCK|1|8|G|114
*
7UCK|1|8|U|136
7UCK|1|8|A|137
7UCK|1|8|C|138
Current chains
- Chain 5
- 28s rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain N
- 60S ribosomal protein L15
- Chain X
- 60S ribosomal protein L23a
- Chain h
- 60S ribosomal protein L35
- Chain j
- 60S ribosomal protein L37
- Chain l
- 60S ribosomal protein L39
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