3D structure

PDB id
7UG6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
AGG*CGAUGAAG*UGAACG*CG*CAU
Length
22 nucleotides
Bulged bases
7UG6|1|2|U|38
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7UG6_001 not in the Motif Atlas
Homologous match to J5_8P9A_010
Geometric discrepancy: 0.0609
The information below is about J5_8P9A_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_01737.2
Basepair signature
cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

7UG6|1|1|A|20
7UG6|1|1|G|21
7UG6|1|1|G|22
*
7UG6|1|2|C|35
7UG6|1|2|G|36
7UG6|1|2|A|37
7UG6|1|2|U|38
7UG6|1|2|G|39
7UG6|1|2|A|40
7UG6|1|2|A|41
7UG6|1|2|G|42
*
7UG6|1|2|U|102
7UG6|1|2|G|103
7UG6|1|2|A|104
7UG6|1|2|A|105
7UG6|1|2|C|106
7UG6|1|2|G|107
*
7UG6|1|2|C|115
7UG6|1|2|G|116
*
7UG6|1|2|C|137
7UG6|1|2|A|138
7UG6|1|2|U|139

Current chains

Chain 1
25S rRNA
Chain 2
5.8S rRNA

Nearby chains

Chain N
60S ribosomal protein L15-A
Chain X
60S ribosomal protein L25
Chain h
60S ribosomal protein L35-A
Chain j
60S ribosomal protein L37-A
Chain l
60S ribosomal protein L39

Coloring options:


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