J5_7UNU_001

3D structure

PDB id

7UNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAUGAAA*UGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7UNU|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7UNU_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0801

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7UNU|1|A|C|47
7UNU|1|A|G|48
7UNU|1|A|A|49
7UNU|1|A|U|50
7UNU|1|A|G|51
7UNU|1|A|A|52
7UNU|1|A|A|53
7UNU|1|A|A|54
*
7UNU|1|A|U|116
7UNU|1|A|G|117
7UNU|1|A|A|118
7UNU|1|A|A|119
7UNU|1|A|U|120
7UNU|1|A|G|121
*
7UNU|1|A|C|130
7UNU|1|A|A|131
*
7UNU|1|A|U|148
7UNU|1|A|A|149
7UNU|1|A|U|150
*
7UNU|1|A|A|176
7UNU|1|A|G|177
7UNU|1|A|G|178

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34