J5_7UNV_001

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAUGAAA*UGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7UNV|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7UNV_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0639

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7UNV|1|A|C|47
7UNV|1|A|G|48
7UNV|1|A|A|49
7UNV|1|A|U|50
7UNV|1|A|G|51
7UNV|1|A|A|52
7UNV|1|A|A|53
7UNV|1|A|A|54
*
7UNV|1|A|U|116
7UNV|1|A|G|117
7UNV|1|A|A|118
7UNV|1|A|A|119
7UNV|1|A|U|120
7UNV|1|A|G|121
*
7UNV|1|A|C|130
7UNV|1|A|A|131
*
7UNV|1|A|U|148
7UNV|1|A|A|149
7UNV|1|A|U|150
*
7UNV|1|A|A|176
7UNV|1|A|G|177
7UNV|1|A|G|178

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34