3D structure

PDB id
7UNW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
CAAG*CGGACGGG*CAC*GAC*GGCAG
Length
23 nucleotides
Bulged bases
7UNW|1|a|A|60, 7UNW|1|a|A|103, 7UNW|1|a|C|346
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7UNW_009 not in the Motif Atlas
Homologous match to J5_4LFB_002
Geometric discrepancy: 0.1068
The information below is about J5_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.6
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

7UNW|1|a|C|58
7UNW|1|a|A|59
7UNW|1|a|A|60
7UNW|1|a|G|61
*
7UNW|1|a|C|100
7UNW|1|a|G|101
7UNW|1|a|G|102
7UNW|1|a|A|103
7UNW|1|a|C|104
7UNW|1|a|G|105
7UNW|1|a|G|106
7UNW|1|a|G|107
*
7UNW|1|a|C|308
7UNW|1|a|A|309
7UNW|1|a|C|310
*
7UNW|1|a|G|331
7UNW|1|a|A|332
7UNW|1|a|C|333
*
7UNW|1|a|G|344
7UNW|1|a|G|345
7UNW|1|a|C|346
7UNW|1|a|A|347
7UNW|1|a|G|348

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain M
50S ribosomal protein L14
Chain R
50S ribosomal protein L19
Chain p
30S ribosomal protein S16
Chain t
30S ribosomal protein S20
Chain x
Translation initiation factor IF-2

Coloring options:


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