J5_7UPH_001

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7UPH_001 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.141

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

7UPH|1|I|C|35
7UPH|1|I|U|36
7UPH|1|I|G|37
7UPH|1|I|G|38
*
7UPH|1|I|C|402
7UPH|1|I|G|403
7UPH|1|I|U|404
7UPH|1|I|G|405
*
7UPH|1|I|C|435
7UPH|1|I|U|436
7UPH|1|I|U|437
7UPH|1|I|U|438
7UPH|1|I|C|439
*
7UPH|1|I|G|496
7UPH|1|I|A|497
7UPH|1|I|A|498
7UPH|1|I|G|499
*
7UPH|1|I|C|544
7UPH|1|I|A|545
7UPH|1|I|A|546
7UPH|1|I|G|547

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain Y

30S ribosomal protein S4

Chain g

30S ribosomal protein S12