J5_7UPH_003
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 7UPH|1|I|A|108, 7UPH|1|I|C|351
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7UPH_003 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.2359
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7UPH|1|I|C|57
7UPH|1|I|A|58
7UPH|1|I|A|59
7UPH|1|I|G|60
*
7UPH|1|I|C|105
7UPH|1|I|G|106
7UPH|1|I|G|107
7UPH|1|I|A|108
7UPH|1|I|C|109
7UPH|1|I|G|110
7UPH|1|I|G|111
7UPH|1|I|G|112
*
7UPH|1|I|C|313
7UPH|1|I|A|314
7UPH|1|I|C|315
*
7UPH|1|I|G|336
7UPH|1|I|A|337
7UPH|1|I|C|338
*
7UPH|1|I|G|349
7UPH|1|I|G|350
7UPH|1|I|C|351
7UPH|1|I|A|352
7UPH|1|I|G|353
Current chains
- Chain I
- Tethered rRNA
Nearby chains
- Chain C
- 30S ribosomal protein S16
- Chain G
- 30S ribosomal protein S20
- Chain S
- 50S ribosomal protein L14
Coloring options: