J5_7UPH_006
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 7UPH|1|I|U|2311, 7UPH|1|I|U|2749
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7UPH_006 not in the Motif Atlas
- Homologous match to J5_7A0S_004
- Geometric discrepancy: 0.1989
- The information below is about J5_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
7UPH|1|I|C|2084
7UPH|1|I|G|2085
7UPH|1|I|A|2086
7UPH|1|I|C|2087
7UPH|1|I|U|2088
7UPH|1|I|U|2089
*
7UPH|1|I|A|2168
7UPH|1|I|G|2169
7UPH|1|I|A|2170
7UPH|1|I|C|2171
*
7UPH|1|I|G|2309
7UPH|1|I|U|2310
7UPH|1|I|U|2311
7UPH|1|I|C|2312
*
7UPH|1|I|G|2689
7UPH|1|I|C|2690
*
7UPH|1|I|G|2744
7UPH|1|I|C|2745
7UPH|1|I|G|2746
7UPH|1|I|A|2747
7UPH|1|I|A|2748
7UPH|1|I|U|2749
7UPH|1|I|G|2750
Current chains
- Chain I
- Tethered rRNA
Nearby chains
- Chain M
- 50S ribosomal protein L4
- Chain T
- 50S ribosomal protein L15
- Chain l
- 50S ribosomal protein L35
- Chain p
- 50S ribosomal protein L20
- Chain q
- 50S ribosomal protein L21
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