3D structure

PDB id
7UPH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a ribosome with tethered subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
4.18 Å

Loop

Sequence
CGACUU*AGAC*GUUC*GC*GCGAAUG
Length
23 nucleotides
Bulged bases
7UPH|1|I|U|2311, 7UPH|1|I|U|2749
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7UPH_006 not in the Motif Atlas
Homologous match to J5_7A0S_004
Geometric discrepancy: 0.1989
The information below is about J5_7A0S_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_74302.5
Basepair signature
cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

7UPH|1|I|C|2084
7UPH|1|I|G|2085
7UPH|1|I|A|2086
7UPH|1|I|C|2087
7UPH|1|I|U|2088
7UPH|1|I|U|2089
*
7UPH|1|I|A|2168
7UPH|1|I|G|2169
7UPH|1|I|A|2170
7UPH|1|I|C|2171
*
7UPH|1|I|G|2309
7UPH|1|I|U|2310
7UPH|1|I|U|2311
7UPH|1|I|C|2312
*
7UPH|1|I|G|2689
7UPH|1|I|C|2690
*
7UPH|1|I|G|2744
7UPH|1|I|C|2745
7UPH|1|I|G|2746
7UPH|1|I|A|2747
7UPH|1|I|A|2748
7UPH|1|I|U|2749
7UPH|1|I|G|2750

Current chains

Chain I
Tethered rRNA

Nearby chains

Chain M
50S ribosomal protein L4
Chain T
50S ribosomal protein L15
Chain l
50S ribosomal protein L35
Chain p
50S ribosomal protein L20
Chain q
50S ribosomal protein L21

Coloring options:


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