J5_7UPH_008

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

ACUAGGCAAAAUGG*CGC*GUC*GAUACCAGC*GGCUGU

Length

35 nucleotides

Bulged bases

7UPH|1|I|U|3252, 7UPH|1|I|G|3257, 7UPH|1|I|G|3486

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7UPH|1|I|A|3163
7UPH|1|I|C|3164
7UPH|1|I|U|3165
7UPH|1|I|A|3166
7UPH|1|I|G|3167
7UPH|1|I|G|3168
7UPH|1|I|C|3169
7UPH|1|I|A|3170
7UPH|1|I|A|3171
7UPH|1|I|A|3172
7UPH|1|I|A|3173
7UPH|1|I|U|3174
7UPH|1|I|G|3175
7UPH|1|I|G|3176
*
7UPH|1|I|C|3200
7UPH|1|I|G|3201
7UPH|1|I|C|3202
*
7UPH|1|I|G|3244
7UPH|1|I|U|3245
7UPH|1|I|C|3246
*
7UPH|1|I|G|3250
7UPH|1|I|A|3251
7UPH|1|I|U|3252
7UPH|1|I|A|3253
7UPH|1|I|C|3254
7UPH|1|I|C|3255
7UPH|1|I|A|3256
7UPH|1|I|G|3257
7UPH|1|I|C|3258
*
7UPH|1|I|G|3482
7UPH|1|I|G|3483
7UPH|1|I|C|3484
7UPH|1|I|U|3485
7UPH|1|I|G|3486
7UPH|1|I|U|3487

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain L

50S ribosomal protein L3

Chain S

50S ribosomal protein L14

Chain o

50S ribosomal protein L19