J5_7UPH_009
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCG(2MA)(PSU)GU*GUUUAG*CGGUCC
- Length
- 35 nucleotides
- Bulged bases
- 7UPH|1|I|A|3556, 7UPH|1|I|A|3942, 7UPH|1|I|U|3943, 7UPH|1|I|U|4079, 7UPH|1|I|U|4103, 7UPH|1|I|C|4104
- QA status
- Modified nucleotides: 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7UPH|1|I|G|3551
7UPH|1|I|A|3552
7UPH|1|I|A|3553
7UPH|1|I|A|3554
7UPH|1|I|G|3555
7UPH|1|I|A|3556
7UPH|1|I|C|3557
7UPH|1|I|C|3558
*
7UPH|1|I|G|3940
7UPH|1|I|G|3941
7UPH|1|I|A|3942
7UPH|1|I|U|3943
7UPH|1|I|A|3944
7UPH|1|I|A|3945
7UPH|1|I|C|3946
7UPH|1|I|A|3947
*
7UPH|1|I|U|3994
7UPH|1|I|C|3995
7UPH|1|I|G|3996
7UPH|1|I|2MA|3997
7UPH|1|I|PSU|3998
7UPH|1|I|G|3999
7UPH|1|I|U|4000
*
7UPH|1|I|G|4077
7UPH|1|I|U|4078
7UPH|1|I|U|4079
7UPH|1|I|U|4080
7UPH|1|I|A|4081
7UPH|1|I|G|4082
*
7UPH|1|I|C|4100
7UPH|1|I|G|4101
7UPH|1|I|G|4102
7UPH|1|I|U|4103
7UPH|1|I|C|4104
7UPH|1|I|C|4105
Current chains
- Chain I
- Tethered rRNA
Nearby chains
- Chain K
- 50S ribosomal protein L2
- Chain L
- 50S ribosomal protein L3
- Chain M
- 50S ribosomal protein L4
- Chain T
- 50S ribosomal protein L15
- Chain i
- 50S ribosomal protein L32
- Chain r
- 50S ribosomal protein L22
Coloring options: