J5_7UQB_003
3D structure
- PDB id
- 7UQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.43 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 7UQB|1|1|U|719, 7UQB|1|1|A|784, 7UQB|1|1|G|785
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7UQB_003 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.0756
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56629.1
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
7UQB|1|1|C|675
7UQB|1|1|G|676
7UQB|1|1|A|677
7UQB|1|1|G|678
*
7UQB|1|1|C|702
7UQB|1|1|G|703
7UQB|1|1|U|704
7UQB|1|1|A|705
7UQB|1|1|A|706
*
7UQB|1|1|U|713
7UQB|1|1|G|714
7UQB|1|1|A|715
7UQB|1|1|A|716
7UQB|1|1|C|717
7UQB|1|1|G|718
7UQB|1|1|U|719
7UQB|1|1|A|720
7UQB|1|1|G|721
*
7UQB|1|1|C|749
7UQB|1|1|G|750
7UQB|1|1|A|751
*
7UQB|1|1|U|782
7UQB|1|1|A|783
7UQB|1|1|A|784
7UQB|1|1|G|785
7UQB|1|1|A|786
7UQB|1|1|G|787
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain L
- 60S ribosomal protein L13-A
- Chain Q
- 60S ribosomal protein L18-A
- Chain a
- 60S ribosomal protein L28
- Chain i
- 60S ribosomal protein L36-A
Coloring options: