J5_7UVV_009

3D structure

PDB id

7UVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome-Streptothricin-F complex: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

7UVV|1|a|A|105, 7UVV|1|a|C|348

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7UVV_009 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0992

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7UVV|1|a|C|60
7UVV|1|a|A|61
7UVV|1|a|A|62
7UVV|1|a|G|63
*
7UVV|1|a|C|102
7UVV|1|a|G|103
7UVV|1|a|G|104
7UVV|1|a|A|105
7UVV|1|a|C|106
7UVV|1|a|G|107
7UVV|1|a|G|108
7UVV|1|a|G|109
*
7UVV|1|a|C|310
7UVV|1|a|A|311
7UVV|1|a|C|312
*
7UVV|1|a|G|333
7UVV|1|a|A|334
7UVV|1|a|C|335
*
7UVV|1|a|G|346
7UVV|1|a|G|347
7UVV|1|a|C|348
7UVV|1|a|A|349
7UVV|1|a|G|350

Current chains

Chain a

16s Ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L14

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20