J5_7UVZ_009

3D structure

PDB id

7UVZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome-Streptothricin-D complex: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

7UVZ|1|a|A|105, 7UVZ|1|a|C|348

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7UVZ_009 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0889

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7UVZ|1|a|C|60
7UVZ|1|a|A|61
7UVZ|1|a|A|62
7UVZ|1|a|G|63
*
7UVZ|1|a|C|102
7UVZ|1|a|G|103
7UVZ|1|a|G|104
7UVZ|1|a|A|105
7UVZ|1|a|C|106
7UVZ|1|a|G|107
7UVZ|1|a|G|108
7UVZ|1|a|G|109
*
7UVZ|1|a|C|310
7UVZ|1|a|A|311
7UVZ|1|a|C|312
*
7UVZ|1|a|G|333
7UVZ|1|a|A|334
7UVZ|1|a|C|335
*
7UVZ|1|a|G|346
7UVZ|1|a|G|347
7UVZ|1|a|C|348
7UVZ|1|a|A|349
7UVZ|1|a|G|350

Current chains

Chain a

16s Ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L14

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20