J5_7V2M_001
3D structure
- PDB id
- 7V2M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophilus 30S ribosome with KsgA, class K1k4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7V2M_001 not in the Motif Atlas
- Homologous match to J5_4LFB_001
- Geometric discrepancy: 0.0776
- The information below is about J5_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_70703.1
- Basepair signature
- cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
7V2M|1|A|C|37
7V2M|1|A|U|38
7V2M|1|A|G|39
7V2M|1|A|G|40
*
7V2M|1|A|C|399
7V2M|1|A|U|400
7V2M|1|A|U|401
7V2M|1|A|G|402
*
7V2M|1|A|C|432
7V2M|1|A|U|433
7V2M|1|A|G|434
7V2M|1|A|A|435
7V2M|1|A|A|436
7V2M|1|A|C|437
*
7V2M|1|A|G|477
7V2M|1|A|G|478
7V2M|1|A|U|479
7V2M|1|A|A|480
7V2M|1|A|A|481
7V2M|1|A|U|482
7V2M|1|A|A|483
7V2M|1|A|G|484
*
7V2M|1|A|C|529
7V2M|1|A|G|530
7V2M|1|A|A|531
7V2M|1|A|G|532
Current chains
- Chain A
- 16s ribosomal RNA
Nearby chains
- Chain D
- 30S ribosomal protein S4
- Chain L
- 30S ribosomal protein S12
Coloring options: